CDS

Accession Number TCMCG051C23060
gbkey CDS
Protein Id XP_024460761.1
Location complement(join(4440102..4440473,4440778..4440882,4441674..4441781,4441856..4442011,4442158..4442249,4442371..4442440,4442518..4442634,4442807..4442947,4443088..4443156,4443262..4443351,4443425..4443607,4443754..4443801))
Gene LOC7483093
GeneID 7483093
Organism Populus trichocarpa

Protein

Length 516aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA17973
db_source XM_024604993.1
Definition small RNA degrading nuclease 1 [Populus trichocarpa]

EGGNOG-MAPPER Annotation

COG_category L
Description Small RNA degrading nuclease
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03009        [VIEW IN KEGG]
KEGG_ko ko:K14570        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03008        [VIEW IN KEGG]
map03008        [VIEW IN KEGG]
GOs GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004518        [VIEW IN EMBL-EBI]
GO:0004527        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006401        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008408        [VIEW IN EMBL-EBI]
GO:0009056        [VIEW IN EMBL-EBI]
GO:0009057        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010586        [VIEW IN EMBL-EBI]
GO:0010587        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016592        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016788        [VIEW IN EMBL-EBI]
GO:0019439        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034655        [VIEW IN EMBL-EBI]
GO:0034660        [VIEW IN EMBL-EBI]
GO:0034661        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044248        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044265        [VIEW IN EMBL-EBI]
GO:0044270        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044451        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0046700        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090305        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901361        [VIEW IN EMBL-EBI]
GO:1901575        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGACAAAAACCTCCTCGCCAACAGAGTAGCCGCCGCTTCGGATAAGGTGCTTGCTGAAGTGGTGAAGTTAACTCAAAAGCAAGGAAGGAGAGGTAGTCAAGGAAGCTGGAAGCAGTTTTTAAATGTTTATGAGAGGAAGTTTGGGTCTGGCTTTAGTGATCCGGCGAGAAAGTCACGCGATTCACTCGTTGCGTTTCTTCAAACTTTTACTGATGAGGATGGCTTGAAGTTTGTTGATAATGTGCTTCGGTCGCTTTCGAATTGTGAGATGTTGAAAGAAACTATGAAAGAATCTCTGGAAAATGAATCACCTGAACAGAGGCTGGTTCGTTCTACTCTTGAACATCCACTTTACCTGTCAAAGTATGCACTTCCATCGTATGAGAAGGGATGGGCAGTAACGAAGGTCCGGAAAAAGCCCAAGCTGCTAAGATGTAATAAAATGCTTGCTGTTGATTGTGAGATGGTTCTCTGTAAGGATGGTACCGATGCTTTAGTGAGGGTGTGTGTGGTGGATGCGGATTTAAAGGTAAAACTTGATGAATTAGTGAATCCATGCAAACCAGTTGAAGATTATAGAACTGAGATTACTGGAGTTACTGCTGAAGTTTTGGATGGAGCGTCTTGTTCAGTTGCAGATATACAGATATCCATGAAGAAGTTATTATCGAGGGGAACTATTTTAGTGGGCCATAGTTTATATAATGACCTAGAAGCACTAAAGTTAGACCATGCAAGAGTGATTGATACGTCATTTATTTTCAAAAGTTCAGATGGACGTTCACCTTCCTTAAATAATTTGTGTAAGTCTGTGCTGGGCTATGAACTTCGCAAAGCAGGTGATCCACACAACTGCTTAGATGATGCATGTGCTGCAATGAAACTTGTTCTTGCTAAGATCGAGCGTGGAGTTGATAATTACATTCCATTGATTCAACCAGATGTGAAAGATGCAAGTTACAATGTTCCAGAAATAGAAATGGCAAAGCTACTTCTCCACAAAATACCGGTTACTGTCCCCCGAGAAAAATTACGTAGACTGTTCCCTGCAAACTATACAATTGAAATCAAGACACATAAGGTGATTCAGGGAGTGGGATATTCTGTGCTTGCCATCTTTAAGAATCCAGAAGAGGCATGCCAAGCATTTGAAAATTTGATTGGCAGCCTAGAAAAGGACACGTCTGGCCGACCACAGAAACTAGTAGCACTTCAACTTGACACAGGAGGATCTGCTGGCATACGGGTTCGCAAAATGACACATGATAGCCATGTTTCACAGAAAAAGAGATCTTTTGAGGGTGAGGATTCAGGGGATCCCAAGAAACCGAAGATAGACCAATGTGAGGATCACGTGAAAGAGATTGAAAGATTGAAGCAAGAACTGAAGAAACAGGAGTTAAATCAGTGTGATGACCACTTGAAAGAGATTGAAAGACTGAAGCAAGAAATAAAAACAAAAGATTTTGAAATCACCGCCCAGGATAAGATCATAACCGAACTGAAAAGGAAATTGGAAGAAATGAAAAAGAAAAAGAAGGAACGCTAA
Protein:  
MDKNLLANRVAAASDKVLAEVVKLTQKQGRRGSQGSWKQFLNVYERKFGSGFSDPARKSRDSLVAFLQTFTDEDGLKFVDNVLRSLSNCEMLKETMKESLENESPEQRLVRSTLEHPLYLSKYALPSYEKGWAVTKVRKKPKLLRCNKMLAVDCEMVLCKDGTDALVRVCVVDADLKVKLDELVNPCKPVEDYRTEITGVTAEVLDGASCSVADIQISMKKLLSRGTILVGHSLYNDLEALKLDHARVIDTSFIFKSSDGRSPSLNNLCKSVLGYELRKAGDPHNCLDDACAAMKLVLAKIERGVDNYIPLIQPDVKDASYNVPEIEMAKLLLHKIPVTVPREKLRRLFPANYTIEIKTHKVIQGVGYSVLAIFKNPEEACQAFENLIGSLEKDTSGRPQKLVALQLDTGGSAGIRVRKMTHDSHVSQKKRSFEGEDSGDPKKPKIDQCEDHVKEIERLKQELKKQELNQCDDHLKEIERLKQEIKTKDFEITAQDKIITELKRKLEEMKKKKKER